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[furicle ---]

Thank you for your comments.  

Just removing the cache didn't help.

I did a brief walkthrough of all the things you are doing in that (not so little) script.

I can see a bunch of things I hadn't considered.

This is going to require more thought on my end, and probably a different approach and/or separate server.
 
> 
> 
> I've done a little script [1] to install and configure cgit in user environment, under centos 7. 
> 
> I had to make a selinux modules to make it working. 
> 
> You will perhaps find some tips for your error.